Salted Pretzel Chocolate Chip Cookies: Sweet Meets Crunch

These chocolate chip pretzel cookies combine melty chocolate and crunchy pretzels for the perfect sweet-and-salty bite.

6 chocolate chip pretzel cookies topped with a mini pretzel and a sprinkle of flaky sea salt. surrounded by chocolate chips and pretzels

These chocolate chip pretzel cookies are a delicious spin on a classic chocolate chip cookie. They bake up with chewy edges, soft, gooey centers, pockets of melty chocolate, and plenty of crunchy pretzel pieces. A light sprinkle of flaky sea salt on top balances the sweetness for an irresistible treat.

a chocolate chip pretzel cookie with a bite taken out of it topped with a mini pretzel and a sprinkle of flaky sea salt. surrounded by chocolate chips and pretzels and more cookies

Pretzel Cookies: Ingredients & Substitutions

overhead photo of the labeled ingredients in this Chocolate Chip Pretzel Cookies recipe like butter, flour, egg, chocolate chips, sugar, and pretzels.
  • Salted butter. You can substitute unsalted butter, vegan butter sticks, or coconut oil.
  • Granulated sugar. Regular white sugar or organic cane sugar work well.
  • Light brown sugar. Swap for dark brown sugar if you prefer a stronger molasses flavor.
  • All-purpose flour. For a gluten-free version use a 1:1 all-purpose gluten-free flour blend.
  • Fine sea salt. Use fine sea salt (not coarse). If using iodized table salt, reduce the amount by half.
  • Chocolate chips. Use semisweet, dark, or milk chocolate chips—feel free to include some caramel chips for variation.
  • Pretzels. Small pretzels or mini pretzel sticks are ideal. Use gluten-free pretzels with gluten-free flour to keep the recipe gluten-free.
9 chocolate chip pretzel cookies each topped with a mini pretzel and a sprinkle of flaky sea salt. surrounded by chocolate chips and pretzels

How to Make Pretzel Cookies

Note: the dough needs to chill, so allow time before baking.

Preheat the oven to 375°F (190°C) and line two baking sheets with parchment paper or silicone mats.

two baking sheets lined with silicone baking mats

In a medium bowl, whisk together the flour, baking soda, baking powder, and fine sea salt. Set aside.

making pretzel cookies - dry ingredients in a bowl before mixing
making pretzel cookies - dry ingredients mixed in a bowl with a spoon

In a stand mixer fitted with the paddle attachment, or with a hand mixer, beat the softened butter, granulated sugar, and brown sugar on medium-high until light and creamy, about 1 minute.

making pretzel cookies - butter, white sugar and brown sugar in a mixer before beating
making pretzel cookies - butter and sugars beaten in a bowl with a beater

Add the egg and vanilla, and beat for another minute until combined.

making pretzel cookies - egg and vanilla added to beaten butter sugar mixture before mixing
making pretzel cookies - dough beaten after adding egg and vanilla

Mix in the dry ingredients on medium speed until just combined. Then fold in the chocolate chips and broken pretzel pieces so they are evenly distributed through the dough.

making pretzel cookies - pretzels and chocolate chips added before stirring
chocolate chip pretzel cookies dough mixed with a spoon in it

Transfer the dough to an airtight container and chill for at least 1 hour.

chocolate chip pretzel cookies dough in a glass container to chill
a cookie scoop with a scoop of chocolate chip pretzel cookie dough in it

After chilling, portion the dough with a 2-tablespoon cookie scoop, roll into balls, and place about eight dough balls per sheet, leaving space between them. This recipe yields roughly 16–18 cookies depending on scoop size.

a hand rolling a ball of cookie dough
8 balls of chocolate chip pretzel cookies dough on a baking sheet before baking

Press a whole pretzel or pretzel pieces gently into the top of each cookie for presentation.

a hand pressing a pretzel into the top of a cookie dough ball
8 balls of chocolate chip pretzel cookies dough with pretzel on top on a baking sheet before baking

Bake for 9–11 minutes, until the tops are set and the edges are just beginning to turn light golden brown. Remove from the oven and immediately sprinkle with flaky sea salt. Let the cookies rest on the baking sheet for 5–10 minutes, then transfer to a wire rack to cool completely.

8 Chocolate Chip Pretzel Cookies on a baking sheet after baking
a hand sprinkling flaky sea salt on a Pretzel Cookie
12 Chocolate Chip Pretzel Cookies on a wire cooling rack each topped with a mini pretzel and flaky sea salt

Serve

Serve the cookies at room temperature or slightly warm. They make a terrific addition to dessert trays and cookie assortments.

6 chocolate chip pretzel cookies topped with a mini pretzel and a sprinkle of flaky sea salt. surrounded by chocolate chips and pretzels

Store

Once cooled, keep the cookies in an airtight container at room temperature for 3–5 days.

Freeze

  • Freeze the dough before baking. Roll dough into balls and freeze in a single layer or separated with parchment in an airtight container for up to 2 months. To bake, thaw overnight in the refrigerator or at room temperature for 1–2 hours, then top with pretzels and bake as directed.
  • Freeze baked cookies. Cool completely, then store in an airtight container in the freezer for up to 2 months. Thaw at room temperature before serving.
a hand holding a pretzel cookie with a bite taken out of it topped with a mini pretzel and flaky sea salt

Chocolate Chip Pretzel Cookies Recipe FAQs

What are the best pretzels to use in cookies?

Mini pretzels or mini pretzel sticks that are firm and salted work best for texture and flavor.

Can I use brown butter in this recipe?

Yes. You can brown the butter first and use it in place of the softened butter for a deeper, toasty flavor.

Can I double this recipe?

Yes, you can double the ingredients to make a larger batch.

a chocolate chip pretzel cookie topped with a mini pretzel and a sprinkle of flaky sea salt. surrounded by chocolate chips and pretzels and other cookies

If you make these cookies and enjoy the recipe, feel free to leave a comment and rating.

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Chocolate Chip Pretzel Cookies

Laura

These chocolate chip pretzel cookies are the perfect sweet and salty treat – with melty chocolate chips and crunchy pretzels in every bite!
5 from 1 vote
Course Cookies, Dessert
Cuisine American
Servings 16 Cookies
Calories 198
Prep Time10 minutes
Cook Time10 minutes
Cooling10 minutes
Total Time30 minutes

Equipment

  • measuring spoons
  • measuring cups
  • mixing bowl
  • baking sheet
  • mixer (optional)
  • silicone baking mat or parchment

Ingredients

  • ½ cup salted butter (softened)
  • ½ cup granulated sugar
  • ½ cup light brown sugar
  • 1 tsp pure vanilla extract
  • 1 large egg
  • 1 ¼ cups all-purpose flour
  • ½ tsp baking soda
  • ¼ tsp baking powder
  • ½ tsp fine sea salt
  • ¾ cup chocolate chips (about 5 ounces)
  • ¾ cup pretzels, broken into small pieces
  • Flaky sea salt for sprinkling

Instructions

  1. Preheat oven to 375°F (190°C). Line two baking sheets with parchment paper or silicone mats.
  2. Whisk together flour, baking soda, baking powder, and fine sea salt. Set aside.
  3. Beat butter and both sugars until light and fluffy, about 1 minute.
  4. Add the egg and vanilla and beat until combined, about 1 minute.
  5. Add the dry ingredients and mix on medium until just combined.
  6. Fold in chocolate chips and pretzel pieces.
  7. Transfer dough to an airtight container and chill for at least 1 hour.
  8. Scoop 2-tablespoon portions, roll into balls, and place on prepared baking sheets, about 8 per sheet.
  9. Press a pretzel into the top of each dough ball.
  10. Bake 9–11 minutes, until the tops are set and edges are just turning light golden.
  11. Remove from oven, sprinkle with flaky sea salt, and let cool on the baking sheet 5–10 minutes.
  12. Transfer to a wire rack to cool completely.

Notes

Ingredient Substitutions

  • Use unsalted or vegan butter if preferred.
  • Swap dark brown sugar for a deeper molasses flavor.
  • Use a 1:1 gluten-free flour blend and gluten-free pretzels to make the recipe gluten-free.

Nutrition

Serving: 1 Cookie | Calories: 198 kcal | Carbohydrates: 29 g | Protein: 2 g | Fat: 8 g

Nutrition information is an estimate and should be used as a guideline.

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